Australian New Crops Info 2016
Supported by the Rural Industries Research and Development Corporation

Listing of Interesting Plants of the World:

Medicago truncatula



This species is usually known as:

Medicago truncatula


This species has also been known as:

Medicago truncatula subsp. littoralis, Medicago truncatula subsp. longiaculeata, Medicago truncatula var. longiaculeata, Medicago truncatula subsp. truncatula, Medicago truncatula var. truncatula


Common names:

Barrelclover, Barrel Medic, Barrel Medick, Barrel Clover



Trends (five databases) 1901-2013:
[Number of papers mentioning Medicago truncatula: 4292]



Popularity of Medicago truncatula over time
[Left-hand Plot: Plot of numbers of papers mentioning Medicago truncatula (histogram and left hand axis scale of left-hand plot) and line of best fit, 1901 to 2013 (equation and % variation accounted for in box); Right-hand Plot: Plot of a proportional micro index, derived from numbers of papers mentioning Medicago truncatula as a proportion (scaled by multiplying by one million) of the approximate total number of papers available in databases for that year (frequency polygon and left-hand axis scale of right-hand plot) and line of best fit, 1901 to 2013 (equation and % variation accounted for in box)] 

[For larger charts showing the numbers of papers that have mentioned this species over years, select this link; there are links to come back from there]



[Total number of keywords included in the papers that mentioned this species: 23079]


Medicago truncatula (563), Internet resource (199), gene expression (195), symbiosis (182), nodulation (131), roots (104), nitrogen fixation (101), Sinorhizobium meliloti (96), Arabidopsis thaliana (94), molecular sequence data (93), Proteomics (88), nucleotide sequences (83), Genes (81), Arabidopsis (77), legumes (72), root nodules (69), Medicago sativa (68), transgenic plants (66), plant <ARROW proteins (65), Abiotic stress (59), Arbuscular mycorrhiza (56), Medicago (56), Rhizobium (56), vesicular arbuscular mycorrhizae (55), Glomus intraradices (54), messenger RNA (54), Pisum sativum (54), signal transduction (54), Arbuscular mycorrhizal fungi (53), genomics (52), evolution (50), ethylene (48), Nitric oxide (46), Oxidative stress (46), Plant proteomics (46), transcriptome (44), mass spectrometry (43), calcium (42), Rice (42), Soybean (42), Abscisic acid (41), Glycine max (41), forage legumes (40), complementary DNA (39), Drought (39), mutants (39), Plant (38), amino acid sequences (37), Medicago polymorpha (37), disease resistance (36), gene expression regulation (36), microRNA (36), proteome (36), Salt stress (36), expressed sequence tags (35), genetic variation (35), nitrogen (35), Alfalfa (34), genotype (34), forage crops (32), genome (32), Microarray (32), phylogeny (32), reactive oxygen species (32), seeds (32), genetic markers (31), Auxin (30), Development (30), jasmonic DOWN>acid (30), Glomus mosseae (29), mycorrhizal fungi (29), transcription (genetics) (29), cultivars (28), genetic transformation (28), chromosome mapping (27), leaves (27), Phaseolus vulgaris (27), reporter genes (27), root hairs (27), flavonoids (26), Plant development (26), Resistance (26), Legume (25), promoter regions (25), biosynthesis (24), Cadmium (24), Cell wall (24), Phosphorus (24), Salinity (24), Trifolium subterraneum (24), enzyme activity (23), Lotus corniculatus var. japonicus (23)…..


[If all keywords are not here (as indicated by .....), they can be accessed from this link; there are links to come back from there]



Most likely scope for crop use/product (%):
[Please note: When there are only a few papers mentioning a species, care should be taken with the interpretation of these crop use/product results; as well, a mention may relate to the use of a species, or the context in which it grows, rather than a product]


Insufficient data to carry out a crop use/product analysis




Recent mentions of this species in the literature:
[since 2012, with links to abstracts; The references from 1901-2013 which have been used for the trend, keyword and crop use/product analyses below, are listed below these references]


Abbasian M, Eslampanah Seyedi HA, Sayed Tabatabaei BE, Arab-Bafrani Z, Mofid MR and Zareie R (2017) Recombinant production, purification and characterization of vessel dilator in E. coli. Protein Expression and Purification 129, 75-83.

Alves WS, Manoel EA, Santos NS, Nunes RO, Domiciano GC and Soares MR (2017) Detection of polycyclic aromatic hydrocarbons (PAHs) in Medicago sativa L. by fluorescence microscopy. Micron 95, 23-30.

Amini S, Maali-Amiri R, Mohammadi R and Kazemi- Shahandashti S-S (2017) cDNA-AFLP analysis of transcripts induced in chickpea plants by TiO2 nanoparticles during cold stress. Plant Physiology and Biochemistry 111, 39-49.

Ammar MH, Khan AM, Migdadi HM, Abdelkhalek SM and Alghamdi SS (2017) Faba bean drought responsive gene identification and validation. Saudi Journal of Biological Sciences 24, 80-9.

Arayamethakorn S, Supungul P, Tassanakajon A and Krusong K (2017) Characterization of molecular properties and regulatory pathways of CrustinPm1 and CrustinPm7 from the black tiger shrimp Penaeus monodon. Developmental & Comparative Immunology 67, 18-29.

Asfahl KL and Schuster M (2017) Social interactions in bacterial cell-cell signaling. FEMS Microbiol Rev 41, 92-107.

Bai B, Bian H, Zeng Z, Hou N, Shi B, Wang J, Zhu M and Han N (2017) miR393-Mediated Auxin Signaling Regulation is Involved in Root Elongation Inhibition in Response to Toxic Aluminum Stress in Barley. Plant Cell Physiol., pcw211.

Berjak P and Pammenter NW (2017) Recalcitrance A2 - Thomas, Brian. In ‘Encyclopedia of Applied Plant Sciences (Second Edition)’. (Ed.^(Eds Murray BG and Murphy DJ) pp. 532-9. (Academic Press: Oxford).

Blackman BK (2017) Changing Responses to Changing Seasons: Natural Variation in the Plasticity of Flowering Time. Plant Physiology 173, 16-26.

Borella J, Oliveira HC, de Oliveira DdSC, Braga EJB, de Oliveira ACB, Sodek L and do Amarante L (2017) Hypoxia-driven changes in glycolytic and tricarboxylic acid cycle metabolites of two nodulated soybean genotypes. Environmental and Experimental Botany 133, 118-27.

Born J and Michalski SG (2017) Strong divergence in quantitative traits and plastic behavior in response to nitrogen availability among provenances of a common wetland plant. Aquatic Botany 136, 138-45.

Boruc J, Weimer AK, Stoppin-Mellet V, Mylle E, Kosetsu K, Cedeno C, Jaquinod M, Njo M, De Milde L, Tompa P, Gonzalez N, Inze D, Beeckman T, Vantard M, Van Damme D and #x (2017) Phosphorylation of MAP65-1 by Arabidopsis Aurora Kinases Is Required for Efficient Cell Cycle Progression. Plant Physiology 173, 582-99.

Bouche F, Woods DP and Amasino RM (2017) Winter Memory throughout the Plant Kingdom: Different Paths to Flowering. Plant Physiology 173, 27-35.

Castillo-Michel HA, Larue C, Pradas del Real AE, Cotte M and Sarret G (2017) Practical review on the use of synchrotron based micro- and nano- X-ray fluorescence mapping and X-ray absorption spectroscopy to investigate the interactions between plants and engineered nanomaterials. Plant Physiology and Biochemistry 110, 13-32.

Cerna H, Černý M, Habánová H, Šafářová D, Abushamsiya K, Navrátil M and Brzobohatý B (2017) Proteomics offers insight to the mechanism behind Pisum sativum L. response to pea seed-borne mosaic virus (PSbMV). Journal of Proteomics 153, 78-88.

Chen M, Liu X, Huan L, Sun M, Liu L, Chen X, Gao D and Li L (2017) Genome-wide analysis of Dof family genes and their expression during bud dormancy in peach (Prunus persica). Scientia Horticulturae 214, 18-26.

Chen W, Li J, Zhu H, Xu P, Chen J and Yao Q (2017) The differential and interactive effects of arbuscular mycorrhizal fungus and phosphorus on the lateral root formation in Poncirus trifoliata (L.). Scientia Horticulturae 217, 258-65.

Chenot J, Jaunatre R, Buisson E and Dutoit T (2017) Long-term effects of topsoil transfer assessed thirty years after rehabilitation of dry alluvial quarries in Southeastern France. Ecological Engineering 99, 1-12.

Chotewutmontri P, Holbrook K and Bruce BD (2017) Chapter Six - Plastid Protein Targeting: Preprotein Recognition and Translocation. In ‘International Review of Cell and Molecular Biology’. (Ed.^(Eds Lorenzo G) pp. 227-94. (Academic Press).

Chungopast S, Duangkhet M, Tajima S, Ma JF and Nomura M (2017) Iron-induced nitric oxide leads to an increase in the expression of ferritin during the senescence of Lotus japonicus nodules. Journal of Plant Physiology 208, 40-6.

Costa JH, Santos CPd, de Sousa e Lima B, Moreira Netto AN, Saraiva KDdC and Arnholdt-Schmitt B (2017) In silico identification of alternative oxidase 2 (AOX2) in monocots: A new evolutionary scenario. Journal of Plant Physiology 210, 58-63.

Couzigou J-M, Lauressergues D, André O, Gutjahr C, Guillotin B, Bécard G and Combier J-P (2017) Positive Gene Regulation by a Natural Protective miRNA Enables Arbuscular Mycorrhizal Symbiosis. Cell Host & Microbe 21, 106-12.

Curtin SJ, Tiffin P, Guhlin J, Trujillo DI, Burghardt LT, Atkins P, Baltes NJ, Denny R, Voytas DF, Stupar RM and Young ND (2017) Validating Genome-Wide Association candidates through quantitative variation in nodulation. Plant Physiology, pp.16.01923.

Daher Z, Recorbet G, Solymosi K, Wienkoop S, Mounier A, Morandi D, Lherminier J, Wipf D, Dumas-Gaudot E and Schoefs B (2017) Changes in plastid proteome and structure in arbuscular mycorrhizal roots display a nutrient starvation signature. Physiologia Plantarum 159, 13-29.

Dai C, Cui W, Pan J, Xie Y, Wang J and Shen W (2017) Proteomic analysis provides insights into the molecular bases of hydrogen gas-induced cadmium resistance in Medicago sativa. Journal of Proteomics 152, 109-20.

De Souza AP, Massenburg LN, Jaiswal D, Cheng S, Shekar R and Long SP (2017) Rooting for cassava: insights into photosynthesis and associated physiology as a route to improve yield potential. New Phytologist 213, 50-65.

Di Giacomo E, Laffont C, Sciarra F, Iannelli MA, Frugier F and Frugis G (2017) KNAT3/4/5-like class 2 KNOX transcription factors are involved in Medicago truncatula symbiotic nodule organ development. New Phytologist 213, 822-37.

DiMario RJ, Clayton H, Mukherjee A, Ludwig M and Moroney JV (2017) Plant Carbonic Anhydrases: Structures, Locations, Evolution, and Physiological Roles. Molecular Plant 10, 30-46.

Ekchaweng K, Khunjan U and Churngchow N (2017) Molecular cloning and characterization of three novel subtilisin-like serine protease genes from Hevea brasiliensis. Physiological and Molecular Plant Pathology 97, 79-95.

Eriksson JS, Blanco-Pastor JL, Sousa F, Bertrand YJK and Pfeil BE (2017) A cryptic species produced by autopolyploidy and subsequent introgression involving Medicago prostrata (Fabaceae). Molecular Phylogenetics and Evolution 107, 367-81.

Ferdous J, Sanchez-Ferrero JC, Langridge P, Milne L, Chowdhury J, Brien C and Tricker PJ (2017) Differential expression of microRNAs and potential targets under drought stress in barley. Plant, Cell & Environment 40, 11-24.

Ferguson BJ (2017) Rhizobia and Legume Nodulation Genes. In ‘Reference Module in Life Sciences’. (Ed.^(Eds  pp. (Elsevier).

Ferreira MJ, Vale D, Cunha L and Melo P (2017) Role of the C-terminal extension peptide of plastid located glutamine synthetase from Medicago truncatula: Crucial for enzyme activity and needless for protein import into the plastids. Plant Physiology and Biochemistry 111, 226-33.

Figueredo MS, Tonelli ML, Ibáñez F, Morla F, Cerioni G, del Carmen Tordable M and Fabra A (2017) Induced systemic resistance and symbiotic performance of peanut plants challenged with fungal pathogens and co-inoculated with the biocontrol agent Bacillus sp. CHEP5 and Bradyrhizobium sp. SEMIA6144. Microbiological Research 197, 65-73.

Floris B, Galloni P, Sabuzi F and Conte V (2017) Metal systems as tools for soil remediation. Inorganica Chimica Acta 455, Part 2, 429-45.

Franco-Zorrilla JM and Solano R (2017) Identification of plant transcription factor target sequences. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1860, 21-30.

Fugate KK, de Oliveira LS, Ferrareze JP, Bolton MD, Deckard EL and Finger FL (2017) Jasmonic acid causes short- and long-term alterations to the transcriptome and the expression of defense genes in sugarbeet roots. Plant Gene 9, 50-63.

Ghorbel M, Cotelle V, Ebel C, Zaidi I, Ormancey M, Galaud J-P and Hanin M (2017) Regulation of the wheat MAP kinase phosphatase 1 by 14-3-3 proteins. Plant Science 257, 37-47.

Giles CD, Brown LK, Adu MO, Mezeli MM, Sandral GA, Simpson RJ, Wendler R, Shand CA, Menezes-Blackburn D, Darch T, Stutter MI, Lumsdon DG, Zhang H, Blackwell MSA, Wearing C, Cooper P, Haygarth PM and George TS (2017) Response-based selection of barley cultivars and legume species for complementarity: Root morphology and exudation in relation to nutrient source. Plant Science 255, 12-28.

Giovannetti M, Volpe V, Salvioli A and Bonfante P (2017) Chapter 7 - Fungal and Plant Tools for the Uptake of Nutrients in Arbuscular Mycorrhizas: A Molecular View. In ‘Mycorrhizal Mediation of Soil’. (Ed.^(Eds  pp. 107-28. (Elsevier).

Gresshoff P (2017) Soybean (Glycine max L). In ‘Reference Module in Life Sciences’. (Ed.^(Eds  pp. (Elsevier).

Guillotin B, Etemadi M, Audran C, Bouzayen M, Bécard G and Combier J-P (2017) Sl-IAA27 regulates strigolactone biosynthesis and mycorrhization in tomato (var. MicroTom). New Phytologist 213, 1124-32.

Guilpart N, Roux S, Gary C and Metay A (2017) The trade-off between grape yield and grapevine susceptibility to powdery mildew and grey mould depends on inter-annual variations in water stress. Agricultural and Forest Meteorology 234–235, 203-11.

Herrbach V, Chirinos X, Rengel D, Agbevenou K, Vincent R, Pateyron S, Huguet S, Balzergue S, Pasha A, Provart N, Gough C and Bensmihen S (2017) Nod factors potentiate auxin signaling for transcriptional regulation and lateral root formation in Medicago truncatula. J. Exp. Bot., erw474.

Hsu Y-H, Tagami T, Matsunaga K, Okuyama M, Suzuki T, Noda N, Suzuki M and Shimura H (2017) Functional characterization of UDP-rhamnose-dependent rhamnosyltransferase involved in anthocyanin modification, a key enzyme determining blue coloration in Lobelia erinus. The Plant Journal, n/a-n/a.

Hu W and Lagarias JC (2017) A Tightly Regulated Genetic Selection System with Signaling-Active Alleles of Phytochrome B. Plant Physiology 173, 366-75.

Hu W, Zhang H, Zhang X, Chen H and Tang M (2017) Characterization of six PHT1 members in Lycium barbarum and their response to arbuscular mycorrhiza and water stress. Tree Physiol, tpw125.

James EK (2017) Nitrogen Fixation A2 - Thomas, Brian. In ‘Encyclopedia of Applied Plant Sciences (Second Edition)’. (Ed.^(Eds Murray BG and Murphy DJ) pp. 271-7. (Academic Press: Oxford).

Jiang D, Rong Q, Chen Y, Yuan Q, Shen Y, Guo J, Yang Y, Zha L, Wu H, Huang L and Liu C (2017) Molecular cloning and functional analysis of squalene synthase (SS) in Panax notoginseng. International Journal of Biological Macromolecules 95, 658-66.

Jin J, Tian F, Yang D-C, Meng Y-Q, Kong L, Luo J and Gao G (2017) PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants. Nucleic Acids Res. 45, D1040-5.

Kamel L, Keller-Pearson M, Roux C and Ané J-M (2017) Biology and evolution of arbuscular mycorrhizal symbiosis in the light of genomics. New Phytologist 213, 531-6.

Krishnakumar V, Contrino S, Cheng C-Y, Belyaeva I, Ferlanti ES, Miller JR, Vaughn MW, Micklem G, Town CD and Chan AP (2017) ThaleMine: A Warehouse for Arabidopsis Data Integration and Discovery. Plant Cell Physiol., pcw200.

Kumar S, Modi AR, Parekh MJ, Mahla HR, Sharma R, Fougat RS, Yadav D, Yadav NR and Patil GB (2017) Role of conventional and biotechnological approaches for genetic improvement of cluster bean. Industrial Crops and Products 97, 639-48.

Leake JR and Read DJ (2017) Chapter 2 - Mycorrhizal Symbioses and Pedogenesis Throughout Earth’s History. In ‘Mycorrhizal Mediation of Soil’. (Ed.^(Eds  pp. 9-33. (Elsevier).

Lee YS, Park H-S, Lee D-K, Jayakodi M, Kim N-H, Lee S-C, Kundu A, Lee D-Y, Kim YC, In JG, Kwon SW and Yang T-J (2017) Comparative analysis of the transcriptomes and primary metabolite profiles of adventitious roots of five Panax ginseng cultivars. Journal of Ginseng Research 41, 60-8.

Lehti-Shiu MD, Panchy N, Wang P, Uygun S and Shiu S-H (2017) Diversity, expansion, and evolutionary novelty of plant DNA-binding transcription factor families. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1860, 3-20.

Lin C-H and Chen C-Y (2017) The pathogen-inducible promoter of defense-related LsGRP1 gene from Lilium functioning in phylogenetically distinct species of plants. Plant Science 254, 22-31.

Lu X, Xiang Y, Yang G, Zhang L, Wang H and Zhong S (2017) Transcriptomic characterization of zebrafish larvae in response to mercury exposure. Comparative Biochemistry and Physiology Part C: Toxicology & Pharmacology 192, 40-9.

Ma W, Wu F, Sheng P, Wang X, Zhang Z, Zhou K, Zhang H, Hu J, Lin Q, Cheng Z, Wang J, Zhu S, Zhang X, Guo X, Wang H, Wu C, Zhai H and Wan J (2017) The LBD12-1 Transcription Factor Suppresses Apical Meristem Size by Repressing Argonaute 10 Expression. Plant Physiology 173, 801-11.

Makarevitch I and Martinez-Vaz B (2017) Killing two birds with one stone: Model plant systems as a tool to teach the fundamental concepts of gene expression while analyzing biological data. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1860, 166-73.

Matthies D (2017) Interactions between a root hemiparasite and 27 different hosts: Growth, biomass allocation and plant architecture. Perspectives in Plant Ecology, Evolution and Systematics 24, 118-37.

Mickiewicz A, Sarzyńska J, Miłostan M, Kurzyńska-Kokorniak A, Rybarczyk A, Łukasiak P, Kuliński T, Figlerowicz M and Błażewicz J (2017) Modeling of the catalytic core of Arabidopsis thaliana Dicer-like 4 protein and its complex with double-stranded RNA. Computational Biology and Chemistry 66, 44-56.

Misra RC, Sharma S,   S, Garg A, Chanotiya CS and Ghosh S (2017) Two CYP716A subfamily cytochrome P450 monooxygenases of sweet basil play similar but nonredundant roles in ursane- and oleanane-type pentacyclic triterpene biosynthesis. New Phytologist, n/a-n/a.

Monkai J, Hyde KD, Xu J and Mortimer PE (2017) Diversity and ecology of soil fungal communities in rubber plantations. Fungal Biology Reviews 31, 1-11.

Nakabayashi R and Saito K (2017) Ultrahigh resolution metabolomics for S-containing metabolites. Current Opinion in Biotechnology 43, 8-16.

Nakamura Y, Kudo T, Terashima S, Saito M, Nambara E and Yano K (2017) CATchUP: A Web Database for Spatiotemporally Regulated Genes. Plant Cell Physiol., pcw199.

Nelson MN, Książkiewicz M, Rychel S, Besharat N, Taylor CM, Wyrwa K, Jost R, Erskine W, Cowling WA, Berger JD, Batley J, Weller JL, Naganowska B and Wolko B (2017) The loss of vernalization requirement in narrow-leafed lupin is associated with a deletion in the promoter and de-repressed expression of a Flowering Locus T (FT) homologue. New Phytologist 213, 220-32.

Ochatt SJ (2017) In Vitro Embryo Culture A2 - Thomas, Brian. In ‘Encyclopedia of Applied Plant Sciences (Second Edition)’. (Ed.^(Eds Murray BG and Murphy DJ) pp. 444-7. (Academic Press: Oxford).

Ordóñez-Baquera PL, González-Rodríguez E, Aguado-Santacruz GA, Rascón-Cruz Q, Conesa A, Moreno-Brito V, Echavarria R and Dominguez-Viveros J (2017) Identification of miRNA from Bouteloua gracilis, a drought tolerant grass, by deep sequencing and their in silico analysis. Computational Biology and Chemistry 66, 26-35.

Pavy N, Lamothe M, Pelgas B, Gagnon F, Birol I, Bohlmann J, Mackay J, Isabel N and Bousquet J (2017) A high resolution reference genetic map positioning 8.8K genes for the conifer white spruce: Structural genomics implications and correspondence with physical distance. The Plant Journal, n/a-n/a.

Peters B, Casey J, Aidley J, Zohrab S, Borg M, Twell D and Brownfield L (2017) A Conserved cis-Regulatory Module Determines Germline Fate through Activation of the Transcription Factor DUO1 Promoter. Plant Physiology 173, 280-93.

Pfannebecker KC, Lange M, Rupp O and Becker A (2017) An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., msw229.

Qi W, Yang Y, Feng X, Zhang M and Song R (2017) Mitochondrial Function and Maize Kernel Development Requires Dek2, a Pentatricopeptide Repeat Protein Involved in nad1 mRNA Splicing. Genetics 205, 239-49.

Qu X, Peterson KM and Torii KU (2017) Stomatal development in time: the past and the future. Current Opinion in Genetics & Development 45, 1-9.

Ribeiro CW, Baldacci-Cresp F, Pierre O, Larousse M, Benyamina S, Lambert A, Hopkins J, Castella C, Cazareth J, Alloing G, Boncompagni E, Couturier J, Mergaert P, Gamas P, Rouhier N, Montrichard F and Frendo P (2017) Regulation of Differentiation of Nitrogen-Fixing Bacteria by Microsymbiont Targeting of Plant Thioredoxin s1. Current Biology 27, 250-6.

Rivera-Becerril F, van Tuinen D, Chatagnier O, Rouard N, Béguet J, Kuszala C, Soulas G, Gianinazzi-Pearson V and Martin-Laurent F (2017) Impact of a pesticide cocktail (fenhexamid, folpel, deltamethrin) on the abundance of Glomeromycota in two agricultural soils. Science of The Total Environment 577, 84-93.

Romero-Munar A, Fernández Del-Saz N, Ribas-Carbó M, Flexas J, Baraza E, Florez-Sarasa I, Fernie AR and Gulías J (2017) Arbuscular mycorrhizal symbiosis with Arundo donax decreases root respiration and increases both photosynthesis and plant biomass accumulation. Plant, Cell & Environment, n/a-n/a.

Rose RJ and Song Y (2017) Somatic Embryogenesis A2 - Thomas, Brian. In ‘Encyclopedia of Applied Plant Sciences (Second Edition)’. (Ed.^(Eds Murray BG and Murphy DJ) pp. 474-9. (Academic Press: Oxford).

Ryalls JMW and Harrington R (2017) Climate and Atmospheric Change Impacts on Aphids as Vectors of Plant Diseases. In ‘Global Climate Change and Terrestrial Invertebrates’. (Ed.^(Eds  pp. 148-75. (John Wiley & Sons, Ltd).

Santolini J, André F, Jeandroz S and Wendehenne D (2017) Nitric oxide synthase in plants: Where do we stand? Nitric Oxide 63, 30-8.

Shahmuradov IA, Umarov RK and Solovyev VV (2017) TSSPlant: a new tool for prediction of plant Pol II promoters. Nucleic Acids Res., gkw1353.

Sharma E, Anand G and Kapoor R (2017) Terpenoids in plant and arbuscular mycorrhiza-reinforced defence against herbivorous insects. Ann. Bot., mcw263.

Singh SK, Verma S and Verma PK (2017) 6 - Genetically Engineered Crops Against Bacterial and Fungal Diseases: A War of Attrition. In ‘Current Developments in Biotechnology and Bioengineering’. (Ed.^(Eds  pp. 125-47. (Elsevier).

Soares JR, José Tenório de Melo E, da Cunha M, Fernandes KVS, Taveira GB, da Silva Pereira L, Pimenta S, Trindade FG, Regente M, Pinedo M, de la Canal L, Gomes VM and de Oliveira Carvalho A (2017) Interaction between the plant ApDef1 defensin and Saccharomyces cerevisiae results in yeast death through a cell cycle- and caspase-dependent process occurring via uncontrolled oxidative stress. Biochimica et Biophysica Acta (BBA) - General Subjects 1861, 3429-43.

Tan W, Bartram S and Boland W (2017) Mechanistic studies of sesquiterpene cyclases based on their carbon isotope ratios at natural abundance. Plant, Cell & Environment, n/a-n/a.

Tanaka Y, Fukuchi-Mizutani M and Mason JG (2017) Cloned Genes. In ‘Reference Module in Life Sciences’. (Ed.^(Eds  pp. (Elsevier).

Tao X, Ma L, Zhang Z, Liu W and Liu Z (2017) Characterization of the complete chloroplast genome of alfalfa (Medicago sativa) (Leguminosae). Gene Reports 6, 67-73.

Thoen MPM, Davila Olivas NH, Kloth KJ, Coolen S, Huang P-P, Aarts MGM, Bac-Molenaar JA, Bakker J, Bouwmeester HJ, Broekgaarden C, Bucher J, Busscher-Lange J, Cheng X, Fradin EF, Jongsma MA, Julkowska MM, Keurentjes JJB, Ligterink W, Pieterse CMJ, Ruyter-Spira C, Smant G, Testerink C, Usadel B, van Loon JJA, van Pelt JA, van Schaik CC, van Wees SCM, Visser RGF, Voorrips R, Vosman B, Vreugdenhil D, Warmerdam S, Wiegers GL, van Heerwaarden J, Kruijer W, van Eeuwijk FA and Dicke M (2017) Genetic architecture of plant stress resistance: multi-trait genome-wide association mapping. New Phytologist 213, 1346-62.

Tian R, Heiden S, Osman WAM, Ardley JK, James EK, Gollagher MM, Tiwari R, Seshadri R, Kyrpides NC and Reeve WG (2017) Evolution of a multi-step phosphorelay signal transduction system in Ensifer: recruitment of the sigma factor RpoN and a novel enhancer-binding protein triggers acid-activated gene expression. Molecular Microbiology, n/a-n/a.

Toporkova YY, Fatykhova VS, Gogolev YV, Khairutdinov BI, Mukhtarova LS and Grechkin AN (2017) Epoxyalcohol synthase of Ectocarpus siliculosus. First CYP74-related enzyme of oxylipin biosynthesis in brown algae. Biochimica et Biophysica Acta (BBA) - Molecular and Cell Biology of Lipids 1862, 167-75.

Tör M and Woods-Tör A (2017) Genetic Modification of Disease Resistance: Fungal and Oomycete Pathogens A2 - Thomas, Brian. In ‘Encyclopedia of Applied Plant Sciences (Second Edition)’. (Ed.^(Eds Murray BG and Murphy DJ) pp. 83-7. (Academic Press: Oxford).

Trabelsi I, Yoneyama K, Abbes Z, Amri M, Xie X, Kisugi T, Kim HI and Kharrat M (2017) Characterization of strigolactones produced by Orobanche foetida and Orobanche crenata resistant faba bean (Vicia faba L.) genotypes and effects of phosphorous, nitrogen, and potassium deficiencies on strigolactone production. South African Journal of Botany 108, 15-22.

Tsai W-C, Wu T-C, Chiang B-L and Wen H-W (2017) Cloning, expression, and purification of recombinant major mango allergen Man i 1 in Escherichia coli. Protein Expression and Purification 130, 35-43.

Valentine AJ, Kleinert A and Benedito VA (2017) Adaptive strategies for nitrogen metabolism in phosphate deficient legume nodules. Plant Science 256, 46-52.

Van Holle S, Rouge P and Van Damme EJM (2017) Evolution and structural diversification of Nictaba-like lectin genes in food crops with a focus on soybean (Glycine max). Ann. Bot., mcw259.

Verret V, Gardarin A, Pelzer E, Médiène S, Makowski D and Valantin-Morison M (2017) Can legume companion plants control weeds without decreasing crop yield? A meta-analysis. Field Crops Research 204, 158-68.

Vosolsobě S, Petrášek J and Schwarzerová K (2017) Evolutionary plasticity of plasma membrane interaction in DREPP family proteins. Biochimica et Biophysica Acta (BBA) - Biomembranes 1859, 686-97.

Wang J, Hou Q, Li P, Yang L, Sun X, Benedito VA, Wen J, Chen B, Mysore KS and Zhao J (2017) Diverse functions of multidrug and toxin extrusion (MATE) transporters in citric acid efflux and metal homeostasis in Medicago truncatula. The Plant Journal, n/a-n/a.

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Yang X, Zhang Z, Gu T, Dong M, Peng Q, Bai L and Li Y (2017) Quantitative proteomics reveals ecological fitness cost of multi-herbicide resistant barnyardgrass (Echinochloa crus-galli L.). Journal of Proteomics 150, 160-9.

Yang Y-F, Cheng Y-H and Liao C-M (2017) Nematode-based biomarkers as critical risk indicators on assessing the impact of silver nanoparticles on soil ecosystems. Ecological Indicators 75, 340-51.

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Zhao L, Feng C, Wu K, Chen W, Chen Y, Hao X and Wu Y (2017) Advances and prospects in biogenic substances against plant virus: A review. Pesticide Biochemistry and Physiology 135, 15-26.

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Zhong J, Zeng X-C, Zeng X, Nie Y, Zhang L, Wu S and Bao A (2017) Transcriptomic analysis of the venom glands from the scorpion Hadogenes troglodytes revealed unique and extremely high diversity of the venom peptides. Journal of Proteomics 150, 40-62.

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Afkhami ME and Stinchcombe JR (2016) Multiple mutualist effects on genomewide expression in the tripartite association between Medicago truncatula, nitrogen-fixing bacteria and mycorrhizal fungi. Molecular Ecology 25, 4946-62.

Agarwal G, Garg V, Kudapa H, Doddamani D, Pazhamala LT, Khan AW, Thudi M, Lee S-H and Varshney RK (2016) Genome-wide dissection of AP2/ERF and HSP90 gene families in five legumes and expression profiles in chickpea and pigeonpea. Plant Biotechnology Journal 14, 1563-77.

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Ait Lahmidi N, Courty P-E, Brulé D, Chatagnier O, Arnould C, Doidy J, Berta G, Lingua G, Wipf D and Bonneau L (2016) Sugar exchanges in arbuscular mycorrhiza: RiMST5 and RiMST6, two novel Rhizophagus irregularis monosaccharide transporters, are involved in both sugar uptake from the soil and from the plant partner. Plant Physiology and Biochemistry 107, 354-63.

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Akman M, Carlson JE, Holsinger KE and Latimer AM (2016) Transcriptome sequencing reveals population differentiation in gene expression linked to functional traits and environmental gradients in the South African shrub Protea repens. New Phytologist 210, 295-309.

Alagna F, Geu-Flores F, Kries H, Panara F, Baldoni L, O’Connor SE and Osbourn A (2016) Identification and Characterization of the Iridoid Synthase Involved in Oleuropein Biosynthesis in Olive (Olea europaea) Fruits. J. Biol. Chem. 291, 5542-54.

Alisoltani A, Ebrahimi S, Azarian S, Hematyar M, Shiran B, Jahanbazi H, Fallahi H, Mousavi-Fard S and Rafiei F (2016) Parallel consideration of SSRs and differentially expressed genes under abiotic stress for targeted development of functional markers in almond and related Prunus species. Scientia Horticulturae 198, 462-72.

Altay V, Karahan F, Öztürk M, Hakeem KR, Ilhan E and Erayman M (2016) Molecular and ecological investigations on the wild populations of Glycyrrhiza L. taxa distributed in the East Mediterranean Area of Turkey. Journal of plant research. 129, 1021-32.

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Anand A, Jayaramaiah RH, Beedkar SD, Singh PA, Joshi RS, Mulani FA, Dholakia BB, Punekar SA, Gade WN, Thulasiram HV and Giri AP (2016) Comparative functional characterization of eugenol synthase from four different Ocimum species: Implications on eugenol accumulation. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics 1864, 1539-47.

Anderson JE, Kono TJY, Stupar RM, Kantar MB and Morrell PL (2016) Environmental Association Analyses Identify Candidates for Abiotic Stress Tolerance in Glycine soja, the Wild Progenitor of Cultivated Soybeans. g3 6, 835-43.

Anderson JP, Hane JK, Stoll T, Pain N, Hastie ML, Kaur P, Hoogland C, Gorman JJ and Singh KB (2016) Proteomic Analysis of Rhizoctonia solani Identifies Infection-specific, Redox Associated Proteins and Insight into Adaptation to Different Plant Hosts. Mol. Cell. Proteomics 15, 1188-203.

Andre CM, Legay S, Deleruelle A, Nieuwenhuizen N, Punter M, Brendolise C, Cooney JM, Lateur M, Hausman J-F, Larondelle Y and Laing WA (2016) Multifunctional oxidosqualene cyclases and cytochrome P450 involved in the biosynthesis of apple fruit triterpenic acids. New Phytologist 211, 1279-94.

Anene A and Declerck S (2016) Combination of Crotalaria spectabilis with Rhizophagus irregularis MUCL41833 decreases the impact of Radopholus similis in banana. Applied Soil Ecology 106, 11-7.

Antoniou C, Savvides A, Christou A and Fotopoulos V (2016) Unravelling chemical priming machinery in plants: the role of reactive oxygen–nitrogen–sulfur species in abiotic stress tolerance enhancement. Current Opinion in Plant Biology 33, 101-7.

Aoki Y, Okamura Y, Tadaka S, Kinoshita K and Obayashi T (2016) ATTED-II in 2016: A Plant Coexpression Database Towards Lineage-Specific Coexpression. Plant Cell Physiol. 57, e5-.

Arasimowicz-Jelonek M, Floryszak-Wieczorek J and Izbiańska K (2016) Chapter Six - Costs and Benefits of Nitric Oxide Generation in Plants Exposed to Cadmium. In ‘Advances in Botanical Research’. (Ed.^(Eds David W) pp. 97-121. (Academic Press).

Arendt P, Pollier J, Callewaert N and Goossens A (2016) Synthetic biology for production of natural and new-to-nature terpenoids in photosynthetic organisms. The Plant Journal 87, 16-37.

Arts IS, Vertommen D, Baldin F, Laloux G and Collet J-F (2016) Comprehensively Characterizing the Thioredoxin Interactome In Vivo Highlights the Central Role Played by This Ubiquitous Oxidoreductase in Redox Control. Mol. Cell. Proteomics 15, 2125-40.

Atsumi G, Suzuki H, Miyashita Y, Choi SH, Hisa Y, Rihei S, Shimada R, Jeon EJ, Abe J, Nakahara KS and Uyeda I (2016) P3N-PIPO, a Frameshift Product from the P3 Gene, Pleiotropically Determines the Virulence of Clover Yellow Vein Virus in both Resistant and Susceptible Peas. J. Virol. 90, 7388-404.

Aviles-Garcia ME, Flores-Cortez I, Hernández-Soberano C, Santoyo G and Valencia-Cantero E (2016) La rizobacteria promotora del crecimiento vegetal Arthrobacter agilis UMCV2 coloniza endofíticamente a Medicago truncatula. Revista Argentina de Microbiología 48, 342-6.

Awad J, van Leeuwen J, Liffner J, Chow C and Drikas M (2016) Treatability of organic matter derived from surface and subsurface waters of drinking water catchments. Chemosphere 144, 1193-200.

Azadi P, Bagheri H, Nalousi AM, Nazari F and Chandler SF (2016) Current status and biotechnological advances in genetic engineering of ornamental plants. Biotechnology Advances 34, 1073-90.

Badri M, Bouhaouel I, Arraouadi S, Taamalli W, Huguet T and Aouani ME (2016) Variation in tolerance to drought among Tunisian populations of Medicago truncatula. Plant genetic resources. 14, 41-9.

Baginsky S (2016) Protein phosphorylation in chloroplasts - a survey of phosphorylation targets. J. Exp. Bot. 67, 3873-82.

Bai L, Qiao M, Zheng R, Deng C, Mei S and Chen W (2016) Phylogenomic analysis of transferrin family from animals and plants. Comparative Biochemistry and Physiology Part D: Genomics and Proteomics 17, 1-8.

Baldrich P, Hsing Y-IC and San Segundo B (2016) Genome-Wide Analysis of Polycistronic MicroRNAs in Cultivated and Wild Rice. Genome Biol Evol 8, 1104-14.

Barabasz A, Klimecka M, Kendziorek M, Weremczuk A, Ruszczynska A, Bulska E and Antosiewicz DM (2016) The ratio of Zn to Cd supply as a determinant of metal-homeostasis gene expression in tobacco and its modulation by overexpressing the metal exporter AtHMA4. J. Exp. Bot. 67, 6201-14.

Baral B, Teixeira da Silva JA and Izaguirre-Mayoral ML (2016) Early signaling, synthesis, transport and metabolism of ureides. Journal of Plant Physiology 193, 97-109.

Barker DG, Chabaud M, Russo G and Genre A (2016) Nuclear Ca2+ signalling in arbuscular mycorrhizal and actinorhizal endosymbioses: on the trail of novel underground signals. New Phytologist, n/a-n/a.

Basavaraju M, Sisnity VS, Palaparthy R and Addanki PK (2016) Quorum quenching: Signal jamming in dental plaque biofilms. Journal of Dental Sciences 11, 349-52.

Batstone RT, Dutton EM, Wang D, Yang M and Frederickson ME (2016) The evolution of symbiont preference traits in the model legume Medicago truncatula. New Phytologist, n/a-n/a.

Bechtold U, Penfold CA, Jenkins DJ, Legaie R, Moore JD, Lawson T, Matthews JSA, Vialet-Chabrand SRM, Baxter L, Subramaniam S, Hickman R, Florance H, Sambles C, Salmon DL, Feil R, Bowden L, Hill C, Baker NR, Lunn JE, Finkensta, #x, dt B, rbel, Mead A, Buchanan-Wollaston V, Beynon J, Rand DA, Wild DL, Denby KJ, Ott S, Smirnoff N and Mullineaux PM (2016) Time-Series Transcriptomics Reveals That AGAMOUS-LIKE22 Affects Primary Metabolism and Developmental Processes in Drought-Stressed Arabidopsis. PLANT CELL 28, 345-66.

Bedi S, Sengupta S, Ray A and Nag Chaudhuri R (2016) ABI3 mediates dehydration stress recovery response in Arabidopsis thaliana by regulating expression of downstream genes. Plant Science 250, 125-40.

Beleggia R, Rau D, Laido G, Platani C, Nigro F, Fragasso M, De Vita P, Scossa F, Fernie AR, Nikoloski Z and Papa R (2016) Evolutionary Metabolomics Reveals Domestication-Associated Changes in Tetraploid Wheat Kernels. Mol. Biol. Evol. 33, 1740-53.

Belmondo S, Calcagno C, Genre A, Puppo A, Pauly N and Lanfranco L (2016) The Medicago truncatula MtRbohE gene is activated in arbusculated cells and is involved in root cortex colonization. Planta. 243, 251-62.

Ben-Gera H, Dafna A, Alvarez JP, Bar M, Mauerer M and Ori N (2016) Auxin-mediated lamina growth in tomato leaves is restricted by two parallel mechanisms. The Plant Journal 86, 443-57.

Beran F, Rahfeld P, Luck K, Nagel R, Vogel H, Wielsch N, Irmisch S, Ramasamy S, Gershenzon J, Heckel DG, Ko, #x and llner TG (2016) Novel family of terpene synthases evolved from trans-isoprenyl diphosphate synthases in a flea beetle. PNAS 113, 2922-7.

Berardi AE, Fields PD, Abbate JL and Taylor DR (2016) Elevational divergence and clinal variation in floral color and leaf chemistry in Silene vulgaris. Am. J. Botany 103, 1508-23.

Beris D, Kapolas G, Livanos P, Roussis A, Milioni D and Haralampidis K (2016) RNAi-mediated silencing of the Arabidopsis thaliana ULCS1 gene, encoding a WDR protein, results in cell wall modification impairment and plant infertility. Plant Science 245, 71-83.

Berthelot K, Lecomte S, Coulary-Salin B, Bentaleb A and Peruch F (2016) Hevea brasiliensis prohevein possesses a conserved C-terminal domain with amyloid-like properties in vitro. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics 1864, 388-99.

Berthelot K, Peruch F and Lecomte S (2016) Highlights on Hevea brasiliensis (pro)hevein proteins. Biochimie 127, 258-70.

Berthouly-Salazar C, Thuillet A-C, Rhoné B, Mariac C, Ousseini IS, Couderc M, Tenaillon MI and Vigouroux Y (2016) Genome scan reveals selection acting on genes linked to stress response in wild pearl millet. Molecular Ecology 25, 5500-12.

Bertrand A, Bipfubusa M, Dhont C, Chalifour F-P, Drouin P and Beauchamp CJ (2016) Rhizobial strains exert a major effect on the amino acid composition of alfalfa nodules under NaCl stress. Plant Physiology and Biochemistry 108, 344-52.

Besnard J, Pratelli R, Zhao C, Sonawala U, Collakova E, Pilot G and Okumoto S (2016) UMAMIT14 is an amino acid exporter involved in phloem unloading in Arabidopsis roots. J. Exp. Bot. 67, 6385-97.

Betz R, Walter S and Requena N (2016) Alternative splicing – an elegant way to diversify the function of repeat-containing effector proteins? New Phytologist 212, 306-9.

Bhuiyan NH, Friso G, Rowland E, Majsec K and van Wijk KJ (2016) The Plastoglobule-Localized Metallopeptidase PGM48 Is a Positive Regulator of Senescence in Arabidopsis thaliana. PLANT CELL 28, 3020-37.

Bi H, Luang S, Li Y, Bazanova N, Morran S, Song Z, Perera MA, Hrmova M, Borisjuk N and Lopato S (2016) Identification and characterization of wheat drought-responsive MYB transcription factors involved in the regulation of cuticle biosynthesis. J. Exp. Bot. 67, 5363-80.

Bilichak A and Eudes F (2016) Chapter 12 - Genetic Engineering of Plants Using Zn Fingers, TALENs, and CRISPRs A2 - Kovalchuk, Igor. In ‘Genome Stability’. (Ed.^(Eds Kovalchuk O) pp. 187-201. (Academic Press: Boston).

Biot E, Cortizo M, Burguet J, Kiss A, Oughou M, Maugarny-Cales A, Goncalves B, Adroher B, Andrey P, Boudaoud A and Laufs P (2016) Multiscale quantification of morphodynamics: MorphoLeaf software for 2D shape analysis. Development 143, 3417-28.

Bircheneder S and Dresselhaus T (2016) Why cellular communication during plant reproduction is particularly mediated by CRP signalling. J. Exp. Bot. 67, 4849-61.

Bitterlich M, Graefe J and Franken P (2016) Primary metabolism in arbuscular mycorrhizal symbiosis. In ‘Molecular Mycorrhizal Symbiosis’. (Ed.^(Eds  pp. 217-38. (John Wiley & Sons, Inc.).

Bizkarguenaga E, Zabaleta I, Prieto A, Fernández LA and Zuloaga O (2016) Uptake of 8:2 perfluoroalkyl phosphate diester and its degradation products by carrot and lettuce from compost-amended soil. Chemosphere 152, 309-17.

Blair MW, Cortés AJ and This D (2016) Identification of an ERECTA gene and its drought adaptation associations with wild and cultivated common bean. Plant Science 242, 250-9.

Bleackley MR, Payne JAE, Hayes BME, Durek T, Craik DJ, Shafee TMA, Poon IKH, Hulett MD, van der Weerden NL and Anderson MA (2016) Nicotiana alata Defensin Chimeras Reveal Differences in the Mechanism of Fungal and Tumor Cell Killing and an Enhanced Antifungal Variant. Antimicrob. Agents Chemother. 60, 6302-12.

Bobille H, Limami AM, Robins RJ, Cukier C, Le Floch G and Fustec J (2016) Evolution of the amino acid fingerprint in the unsterilized rhizosphere of a legume in relation to plant maturity. Soil Biology and Biochemistry 101, 226-36.

Boivin S, Kazmierczak T, Brault M, Wen J, Gamas P, Mysore KS and Frugier F (2016) Different cytokinin histidine kinase receptors regulate nodule initiation as well as later nodule developmental stages in Medicago truncatula. Plant, Cell & Environment 39, 2198-209.

Bond DM, Albert NW, Lee RH, Gillard GB, Brown CM, Hellens RP and Macknight RC (2016) Infiltration-RNAseq: transcriptome profiling of Agrobacterium-mediated infiltration of transcription factors to discover gene function and expression networks in plants. Plant methods. 12, 41.

Bourque S, Jeandroz S, Grandperret V, Lehotai N, Aimé S, Soltis DE, Miles NW, Melkonian M, Deyholos MK, Leebens-Mack JH, Chase MW, Rothfels CJ, Stevenson DW, Graham SW, Wang X, Wu S, Pires JC, Edger PP, Yan Z, Xie Y, Carpenter EJ, Wong GKS, Wendehenne D and Nicolas-Francès V (2016) The Evolution of HD2 Proteins in Green Plants. Trends in Plant Science 21, 1008-16.

Broeckx T, Hulsmans S and Rolland F (2016) The plant energy sensor: evolutionary conservation and divergence of SnRK1 structure, regulation, and function. J. Exp. Bot. 67, 6215-52.

Bruisson S, Maillot P, Schellenbaum P, Walter B, Gindro K and Deglène-Benbrahim L (2016) Arbuscular mycorrhizal symbiosis stimulates key genes of the phenylpropanoid biosynthesis and stilbenoid production in grapevine leaves in response to downy mildew and grey mould infection. Phytochemistry 131, 92-9.

Buendia L, Wang T, Girardin A and Lefebvre B (2016) The LysM receptor-like kinase SlLYK10 regulates the arbuscular mycorrhizal symbiosis in tomato. New Phytologist 210, 184-95.

Bulgheresi S (2016) Bacterial cell biology outside the streetlight. Environmental Microbiology 18, 2305-18.

Bunyatang O, Chirapongsatonkul N, Bangrak P, Henry R and Churngchow N (2016) Molecular cloning and characterization of a novel bi-functional α-amylase/subtilisin inhibitor from Hevea brasiliensis. Plant Physiology and Biochemistry 101, 76-87.

Burgarella C, Chantret N, Gay L, Prosperi J-M, Bonhomme M, Tiffin P, Young ND and Ronfort J (2016) Adaptation to climate through flowering phenology: a case study in Medicago truncatula. Molecular Ecology 25, 3397-415.

Cabello JV, Giacomelli JI, Piattoni CV, Iglesias AA and Chan RL (2016) The sunflower transcription factor HaHB11 improves yield, biomass and tolerance to flooding in transgenic Arabidopsis plants. Journal of Biotechnology 222, 73-83.

Cabello-Hurtado F, Keller J, Ley J, Sanchez-Lucas R, Jorrín-Novo JV and Aïnouche A (2016) Proteomics for exploiting diversity of lupin seed storage proteins and their use as nutraceuticals for health and welfare. Journal of Proteomics 143, 57-68.

Cacas J-L, Bure C, Grosjean K, Gerbeau-Pissot P, Lherminier J, Rombouts Y, Maes E, Bossard C, Gronnier J, Furt F, Fouillen L, Germain V, Bayer E, Cluzet S, Robert F, Schmitter J-M, Deleu M, Lins L, Simon-Plas F and Mongrand S (2016) Revisiting Plant Plasma Membrane Lipids in Tobacco: A Focus on Sphingolipids. Plant Physiology 170, 367-84.

Caffier V, Le Cam B, Al Rifaï M, Bellanger M-N, Comby M, Denancé C, Didelot F, Expert P, Kerdraon T, Lemarquand A, Ravon E and Durel C-E (2016) Slow erosion of a quantitative apple resistance to Venturia inaequalis based on an isolate-specific Quantitative Trait Locus. Infection, Genetics and Evolution 44, 541-8.

Cai S and Zhang G (2016) 7 - Exploration and Utilization of Aluminum-Tolerant Barley Germplasm. In ‘Exploration, Identification and Utilization of Barley Germplasm’. (Ed.^(Eds  pp. 181-208. (Academic Press).

Caine RS, Chater CC, Kamisugi Y, Cuming AC, Beerling DJ, Gray JE and Fleming AJ (2016) An ancestral stomatal patterning module revealed in the non-vascular land plant Physcomitrella patens. Development 143, 3306-14.

Cakir O, Candar-Cakir B and Zhang B (2016) Small RNA and degradome sequencing reveals important microRNA function in Astragalus chrysochlorus response to selenium stimuli. Plant Biotechnology Journal 14, 543-56.

Camejo D, Guzmán-Cedeño Á and Moreno A (2016) Reactive oxygen species, essential molecules, during plant–pathogen interactions. Plant Physiology and Biochemistry 103, 10-23.

Campbell BW and Stupar RM (2016) Soybean (Glycine max) Mutant and Germplasm Resources: Current Status and Future Prospects. In ‘Current Protocols in Plant Biology’. (Ed.^(Eds  pp. (John Wiley & Sons, Inc.).

Campos JF, Cara B, Pérez-Martín F, Pineda B, Egea I, Flores FB, Fernandez-Garcia N, Capel J, Moreno V, Angosto T, Lozano R and Bolarin MC (2016) The tomato mutant ars1 (altered response to salt stress 1) identifies an R1-type MYB transcription factor involved in stomatal closure under salt acclimation. Plant Biotechnology Journal 14, 1345-56.

Campos MD, Campos C, Cardoso HG, Simon PW, Oliveira M, Nogales A and Arnholdt-Schmitt B (2016) Isolation and characterization of plastid terminal oxidase gene from carrot and its relation to carotenoid accumulation. Plant Gene 5, 13-21.

Campos MD, Nogales A, G. Cardoso H, Campos C, Grzebelus D, Velada I and Arnholdt-Schmitt B (2016) Carrot plastid terminal oxidase gene (DcPTOX) responds early to chilling and harbors intronic pre-miRNAs related to plant disease defense. Plant Gene 7, 21-5.

Candar-Cakir B, Arican E and Zhang B (2016) Small RNA and degradome deep sequencing reveals drought-and tissue-specific micrornas and their important roles in drought-sensitive and drought-tolerant tomato genotypes. Plant Biotechnology Journal 14, 1727-46.

Cano L, Fuertes-Mendizabal T, Garcia-Baquero G, Herrera M and Gonzalez-Moro MB (2016) Plasticity to salinity and transgenerational effects in the nonnative shrub Baccharis halimifolia: Insights into an estuarine invasion. Am. J. Botany 103, 808-20.

Canut H, Albenne C and Jamet E (2016) Post-translational modifications of plant cell wall proteins and peptides: A survey from a proteomics point of view. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics 1864, 983-90.

Cao D, Takeshima R, Zhao C, Liu B, Jun A and Kong F (2016) Molecular mechanisms of flowering under long days and stem growth habit in soybean. J. Exp. Bot., erw394.

Capella M, Ribone PA, Arce AL and Chan RL (2016) Chapter 7 - Homeodomain–Leucine Zipper Transcription Factors: Structural Features of These Proteins, Unique to Plants A2 - Gonzalez, Daniel H. In ‘Plant Transcription Factors’. (Ed.^(Eds  pp. 113-26. (Academic Press: Boston).

Carlier A, Fehr L, Pinto-Carbó M, Schäberle T, Reher R, Dessein S, König G and Eberl L (2016) The genome analysis of Candidatus Burkholderia crenata reveals that secondary metabolism may be a key function of the Ardisia crenata leaf nodule symbiosis. Environmental Microbiology 18, 2507-22.

Carrillo-Perdomo E, Jiménez-Arias D, Aller Á and Borges AA (2016) Menadione Sodium Bisulphite (MSB) enhances the resistance response of tomato, leading to repel mollusc pests. Pest Management Science 72, 950-60.

Carrino-Kyker SR, Kluber LA, Petersen SM, Coyle KP, Hewins CR, DeForest JL, Smemo KA and Burke DJ (2016) Mycorrhizal fungal communities respond to experimental elevation of soil pH and P availability in temperate hardwood forests. FEMS Microbiol Ecol 92, fiw024-.

Castillejo M-Á, Iglesias-García R, Wienkoop S and Rubiales D (2016) Label-free quantitative proteomic analysis of tolerance to drought in Pisum sativum. Proteomics 16, 2776-87.

Castro Á, Quiroz D, Sánchez E, Miccono MdlÁ, Aguirre C, Ramírez A, Montes C and Prieto H (2016) Synthesis of an artificial Vitis vinifera miRNA 319e using overlapping long primers and its application for gene silencing. Journal of Biotechnology 233, 200-10.

Ceasar SA, Baker A, Muench SP, Ignacimuthu S and Baldwin SA (2016) The conservation of phosphate-binding residues among PHT1 transporters suggests that distinct transport affinities are unlikely to result from differences in the phosphate-binding site. Biochm. Soc. Trans. 44, 1541-8.

Cerri MR, Frances L, Kelner A, Fournier J, #x, lle, Middleton PH, Auriac M-C, Mysore KS, Wen J, Erard M, Barker DG, Oldroyd GE and de Carvalho-Niebel F (2016) The Symbiosis-Related ERN Transcription Factors Act in Concert to Coordinate Rhizobial Host Root Infection. Plant Physiology 171, 1037-54.

Chabaud M, Gherbi H, Pirolles E, Vaissayre V, Fournier J, Moukouanga D, Franche C, Bogusz D, Tisa LS, Barker DG and Svistoonoff S (2016) Chitinase-resistant hydrophilic symbiotic factors secreted by Frankia activate both Ca2+ spiking and NIN gene expression in the actinorhizal plant Casuarina glauca. New Phytologist 209, 86-93.

Chai L and Shen Y-Y (2016) FaABI4 is involved in strawberry fruit ripening. Scientia Horticulturae 210, 34-40.

Chai M, Zhou C, Molina I, Fu C, Nakashima J, Li G, Zhang W, Park J, Tang Y, Jiang Q and Wang Z-Y (2016) A class II KNOX gene, KNOX4, controls seed physical dormancy. PNAS 113, 6997-7002.

Chaintreuil C, Rivallan R, Bertioli DJ, Klopp C, Gouzy J, Courtois B, Leleux P, Martin G, Rami J-F, Gully D, Parrinello H, Severac D, Patrel D, Fardoux J, #x, Ribiere W, Boursot M, Cartieaux F, Czernic P, Ratet P, Mournet P, Giraud E and Arrighi J-F (2016) A gene-based map of the Nod factor-independent Aeschynomene evenia sheds new light on the evolution of nodulation and legume genomes. DNA Res 23, 365-76.

Chalk PM, Lam SK and Chen D (2016) 15N methodologies for quantifying the response of N2-fixing associations to elevated [CO2]: A review. Science of The Total Environment 571, 624-32.

Champ J, Lorieul T, Bonnet P, Maghnaoui N, Sereno C, Dessup T, Boursiquot J-M, Audeguin L, Lacombe T and Joly A (2016) Categorizing plant images at the variety level: Did you say fine-grained? Pattern Recognition Letters 81, 71-9.

Chandler JW (2016) Auxin response factors. Plant, Cell & Environment 39, 1014-28.

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Fukudome M, Calvo-Begueria L, Kado T, Osuki K-i, Rubio MC, Murakami E-i, Nagata M, Kucho K-i, Sandal N, Stougaard J, Becana M and Uchiumi T (2016) Hemoglobin LjGlb1-1 is involved in nodulation and regulates the level of nitric oxide in the Lotus japonicus-Mesorhizobium loti symbiosis. J. Exp. Bot. 67, 5275-83.

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Gameiro C, Utkin AB, Cartaxana P, Silva JMd and Matos AR (2016) The use of laser induced chlorophyll fluorescence (LIF) as a fast and nondestructive method to investigate water deficit in Arabidopsis. Agricultural Water Management 164, Part 1, 127-36.

Gan H, Jiao Y, Jia J, Wang X, Li H, Shi W, Peng C, Polle A and Luo Z-B (2016) Phosphorus and nitrogen physiology of two contrasting poplar genotypes when exposed to phosphorus and/or nitrogen starvation. Tree Physiol 36, 22-38.

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Gao J-S, Wu N, Shen Z-L, Lv K, Qian S-H, Guo N, Sun X, Cai Y-P and Lin Y (2016) Molecular cloning, expression analysis and subcellular localization of a Transparent Testa 12 ortholog in brown cotton (Gossypium hirsutum L.). Gene 576, 763-9.

Gao K, Xu J-s, Sun J, Xu Y-h, Wei J-h and Sui C (2016) Molecular Cloning and Expression of Squalene Epoxidase from a Medicinal Plant, Bupleurum chinense. Chinese Herbal Medicines 8, 67-74.

Gao Y, Li X, Tian Q-Y, Wang B-L and Zhang W-H (2016) Sulfur deficiency had different effects on Medicago truncatula ecotypes A17 and R108 in terms of growth, root morphology and nutrient contents. Journal of plant nutrition. 39, 301-14.

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Ge L, Yu J, Wang H, Luth D, Bai G, Wang K and Chen R (2016) Increasing seed size and quality by manipulating BIG SEEDS1 in legume species. PNAS 113, 12414-9.

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Givnish TJ, Zuluaga A, Marques I, Lam VKY, Gomez MS, Iles WJD, Ames M, Spalink D, Moeller JR, Briggs BG, Lyon SP, Stevenson DW, Zomlefer W and Graham SW (2016) Phylogenomics and historical biogeography of the monocot order Liliales: out of Australia and through Antarctica. Cladistics 32, 581-605.

Goad DM, Zhu C and Kellogg EA (2016) Comprehensive identification and clustering of CLV3/ESR-related (CLE) genes in plants finds groups with potentially shared function. New Phytologist, n/a-n/a.

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Guo H, Li R, Liu S, Zhao N, Han S, Lu M, Liu X and Xia X (2016) Molecular characterization, expression, and regulation of Gynostemma pentaphyllum squalene epoxidase gene 1. Plant Physiology and Biochemistry 109, 230-9.

Guo H, Sun Y, Peng X, Wang Q, Harris M and Ge F (2016) Up-regulation of abscisic acid signaling pathway facilitates aphid xylem absorption and osmoregulation under drought stress. J. Exp. Bot. 67, 681-93.

Guo L-N, Zhao X-L and Gao X-F (2016) De novo assembly and characterization of leaf transcriptome for the development of EST-SSR markers of the non-model species Indigofera szechuensis. Biochemical Systematics and Ecology 68, 36-43.

Guo S, Yao Y, Zuo L, Shi W, Gao N and Xu H (2016) Enhancement of tolerance of Ganoderma lucidum to cadmium by nitric oxide. Journal of Basic Microbiology 56, 36-43.

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Han X, Yin H, Song X, Zhang Y, Liu M, Sang J, jiang J, Li J and Zhuo R (2016) Integration of small RNAs, degradome and transcriptome sequencing in hyperaccumulator Sedum alfredii uncovers a complex regulatory network and provides insights into cadmium phytoremediation. Plant Biotechnology Journal 14, 1470-83.

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Hanemian M, Barlet X, Sorin C, Yadeta KA, Keller H, Favery B, Simon R, Thomma BPHJ, Hartmann C, Crespi M, Marco Y, Tremousaygue D and Deslandes L (2016) Arabidopsis CLAVATA1 and CLAVATA2 receptors contribute to Ralstonia solanacearum pathogenicity through a miR169-dependent pathway. New Phytologist 211, 502-15.

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Hashemi A, Gharechahi J, Nematzadeh G, Shekari F, Hosseini SA and Salekdeh GH (2016) Two-dimensional blue native/SDS-PAGE analysis of whole cell lysate protein complexes of rice in response to salt stress. Journal of Plant Physiology 200, 90-101.

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Havanapan P-o, Bourchookarn A, Ketterman AJ and Krittanai C (2016) Comparative proteome analysis of rubber latex serum from pathogenic fungi tolerant and susceptible rubber tree (Hevea brasiliensis). Journal of Proteomics 131, 82-92.

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Heindl JE, Hibbing ME, Xu J, Natarajan R, Buechlein AM and Fuqua C (2016) Discrete Responses to Limitation for Iron and Manganese in Agrobacterium tumefaciens: Influence on Attachment and Biofilm Formation. J. Bacteriol. 198, 816-29.

Hendelman A, Kravchik M, Stav R, Frank W and Arazi T (2016) Tomato HAIRY MERISTEM genes are involved in meristem maintenance and compound leaf morphogenesis. J. Exp. Bot. 67, 6187-200.

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Hillwig MS, Chiozza M, Casteel CL, Lau ST, Hohenstein J, Hernández E, Jander G and MacIntosh GC (2016) Abscisic acid deficiency increases defence responses against Myzus persicae in Arabidopsis. Molecular Plant Pathology 17, 225-35.

Hiruma K, Gerlach N, Sacristán S, Nakano Ryohei T, Hacquard S, Kracher B, Neumann U, Ramírez D, Bucher M, O’Connell Richard J and Schulze-Lefert P (2016) Root Endophyte Colletotrichum tofieldiae Confers Plant Fitness Benefits that Are Phosphate Status Dependent. Cell 165, 464-74.

Hivrale V, Zheng Y, Puli COR, Jagadeeswaran G, Gowdu K, Kakani VG, Barakat A and Sunkar R (2016) Characterization of drought- and heat-responsive microRNAs in switchgrass. Plant Science 242, 214-23.

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Hu M, Lu Z, Guo J, Luo Y, Li H, Li L and Gao F (2016) Cloning and characterization of the cDNA and promoter of UDP-glucose:flavonoid 3-O-glucosyltransferase gene from a purple-fleshed sweet potato. South African Journal of Botany 106, 211-20.

Hu Y-B, Sosso D, Qu X-Q, Chen L-Q, Ma L, Chermak D, Zhang D-C and Frommer WB (2016) Phylogenetic evidence for a fusion of archaeal and bacterial SemiSWEETs to form eukaryotic SWEETs and identification of SWEET hexose transporters in the amphibian chytrid pathogen Batrachochytrium dendrobatidis. FASEB J 30, 3644-54.

Huang C-H, Sun R, Hu Y, Zeng L, Zhang N, Cai L, Zhang Q, Koch MA, Al-Shehbaz I, Edger PP, Pires JC, Tan D-Y, Zhong Y and Ma H (2016) Resolution of Brassicaceae Phylogeny Using Nuclear Genes Uncovers Nested Radiations and Supports Convergent Morphological Evolution. Mol. Biol. Evol. 33, 394-412.

Huang J, Zhang Y, Jiang L and Yu Z (2016) Comparative proteomics analysis of differential proteins in response to 6-benzylaminopurine treatment in Pteridium aquilinum senescence. Postharvest Biology and Technology 116, 66-74.

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Ikhsan AS, Topçu H, Sütyemez M and Kafkas S (2016) Novel 307 polymorphic SSR markers from BAC-end sequences in walnut (Juglans regia L.): Effects of motif types and repeat lengths on polymorphism and genetic diversity. Scientia Horticulturae 213, 1-4.

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Jadaun JS, Sangwan NS, Narnoliya LK, Singh N, Bansal S, Mishra B and Sangwan RS (2016) Over-expression of DXS gene enhances terpenoidal secondary metabolite accumulation in rose-scented geranium and Withania somnifera: active involvement of plastid isoprenogenic pathway in their biosynthesis. Physiologia Plantarum, n/a-n/a.

Jakobsen I, Smith SE, Smith FA, Watts-Williams SJ, Clausen SS and Gronlund M (2016) Plant growth responses to elevated atmospheric CO2 are increased by phosphorus sufficiency but not by arbuscular mycorrhizas. J. Exp. Bot. 67, 6173-86.

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Jaudal M, Zhang L, Che C, Hurley DG, Thomson G, Wen J, Mysore KS and Putterill J (2016) MtVRN2 is a Polycomb VRN2-like gene which represses the transition to flowering in the model legume Medicago truncatula. The Plant Journal 86, 145-60.

Jeandroz S, Wipf D, Stuehr DJ, Lamattina L, Melkonian M, Tian Z, Zhu Y, Carpenter EJ, Wong GK-S and Wendehenne D (2016) Occurrence, structure, and evolution of nitric oxide synthase-like proteins in the plant kingdom. Sci. Signal. 9, re2-.;9/417/re2

Jeudy C, Adrian M, Baussard C, Bernard C, Bernaud E, Bourion V, Busset H, Cabrera-Bosquet L, Cointault F, Han S, Lamboeuf M, Moreau D, Pivato B, Prudent M, Trouvelot S, Truong HN, Vernoud V, Voisin A-S, Wipf D and Salon C (2016) RhizoTubes as a new tool for high throughput imaging of plant root development and architecture: test, comparison with pot grown plants and validation. Plant methods. 12, 31.

Jia S, Wang Y, Hu J, Ding Z, Liang Q, Zhang Y and Wang H (2016) Mineral and metabolic profiles in tea leaves and flowers during flower development. Plant Physiology and Biochemistry 106, 316-26.

Jian W, Zhang D-w, Zhu F, Wang S-x, Pu X-j, Deng X-G, Luo S-S and Lin H-h (2016) Alternative oxidase pathway is involved in the exogenous SNP-elevated tolerance of Medicago truncatula to salt stress. Journal of Plant Physiology 193, 79-87.

Jiang J, Jia H, Feng G, Wang Z, Li J, Gao H and Wang X (2016) Overexpression of Medicago sativa TMT elevates the α-tocopherol content in Arabidopsis seeds, alfalfa leaves, and delays dark-induced leaf senescence. Plant Science 249, 93-104.

Jiang N, Wiemels RE, Soya A, Whitley R, Held M and Faik A (2016) Composition, Assembly, and Trafficking of a Wheat Xylan Synthase Complex. Plant Physiology 170, 1999-2023.

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Joly-Lopez Z, Hoen DR, Blanchette M and Bureau TE (2016) Phylogenetic and Genomic Analyses Resolve the Origin of Important Plant Genes Derived from Transposable Elements. Mol. Biol. Evol. 33, 1937-56.

Jorge TF, Mata AT and Antonio C (2016) Mass spectrometry as a quantitative tool in plant metabolomics. Phil Trans R Soc A 374, 20150370-.

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Judy JD, Kirby JK, McLaughlin MJ, McNear Jr D and Bertsch PM (2016) Symbiosis between nitrogen-fixing bacteria and Medicago truncatula is not significantly affected by silver and silver sulfide nanomaterials. Environmental Pollution 214, 731-6.

Jung S, Lee T, Ficklin S, Yu J, Cheng C-H and Main D (2016) Chado use case: storing genomic, genetic and breeding data of Rosaceae and Gossypium crops in Chado. Database 2016, baw010-.

Kagale S, Nixon J, Khedikar Y, Pasha A, Provart NJ, Clarke WE, Bollina V, Robinson SJ, Coutu C, Hegedus DD, Sharpe AG and Parkin IAP (2016) The developmental transcriptome atlas of the biofuel crop Camelina sativa. The Plant Journal 88, 879-94.

Kan Q, Wu W, Yu W, Zhang J, Xu J, Rengel Z, Chen L, Cui X and Chen Q (2016) Nitrate reductase-mediated NO production enhances Cd accumulation in Panax notoginseng roots by affecting root cell wall properties. Journal of Plant Physiology 193, 64-70.

Kang YJ, Lee T, Lee J, Shim S, Jeong H, Satyawan D, Kim MY and Lee S-H (2016) Translational genomics for plant breeding with the genome sequence explosion. Plant Biotechnology Journal 14, 1057-69.

Kannan U, Sharma R, Khedikar Y, Gangola MP, Ganeshan S, Båga M and Chibbar RN (2016) Differential expression of two galactinol synthase isoforms LcGolS1 and LcGolS2 in developing lentil (Lens culinaris Medik. cv CDC Redberry) seeds. Plant Physiology and Biochemistry 108, 422-33.

Kariyat RR and Portman SL (2016) Plant-herbivore interactions: Thinking beyond larval growth and mortality. Am. J. Botany 103, 789-91.

Karlen SD, Zhang C, Peck ML, Smith RA, Padmakshan D, Helmich KE, Free HCA, Lee S, Smith BG, Lu F, Sedbrook JC, Sibout R, Grabber JH, Runge TM, Mysore KS, Harris PJ, Bartley LE and Ralph J (2016) Monolignol ferulate conjugates are naturally incorporated into plant lignins. SciAdv 2, e1600393-.

Ke D, Li X, Han Y, Cheng L, Yuan H and Wang L (2016) ROP6 is involved in root hair deformation induced by Nod factors in Lotus japonicus. Plant Physiology and Biochemistry 108, 488-98.

Kiba T and Krapp A (2016) Plant Nitrogen Acquisition Under Low Availability: Regulation of Uptake and Root Architecture. Plant Cell Physiol. 57, 707-14.

Kim B-S, French E, Caldwell D, Harrington EJ and Iyer-Pascuzzi AS (2016) Bacterial wilt disease: Host resistance and pathogen virulence mechanisms. Physiological and Molecular Plant Pathology 95, 37-43.

Kim J, Woo Hye R and Nam Hong G (2016) Toward Systems Understanding of Leaf Senescence: An Integrated Multi-Omics Perspective on Leaf Senescence Research. Molecular Plant 9, 813-25.

Kisiel A and Kępczyńska E (2016) Medicago truncatula Gaertn. as a model for understanding the mechanism of growth promotion by bacteria from rhizosphere and nodules of alfalfa. Planta. 243, 1169-89.

Kitaeva AB, Demchenko KN, Tikhonovich IA, Timmers ACJ and Tsyganov VE (2016) Comparative analysis of the tubulin cytoskeleton organization in nodules of Medicago truncatula and Pisum sativum: bacterial release and bacteroid positioning correlate with characteristic microtubule rearrangements. New Phytologist 210, 168-83.

Kitajima S, Miura K, Aoki W, Yamato KT, Taira T, Murakami R and Aburaya S (2016) Transcriptome and proteome analyses provide insight into laticifer’s defense of Euphorbia tirucalli against pests. Plant Physiology and Biochemistry 108, 434-46.

Kobae Y, Ohmori Y, Saito C, Yano K, Ohtomo R and Fujiwara T (2016) Phosphate Treatment Strongly Inhibits New Arbuscule Development But Not the Maintenance of Arbuscule in Mycorrhizal Rice Roots. Plant Physiology 171, 566-79.

Koirala N, Thuan NH, Ghimire GP, Thang DV and Sohng JK (2016) Methylation of flavonoids: Chemical structures, bioactivities, progress and perspectives for biotechnological production. Enzyme and Microbial Technology 86, 103-16.

Kolbert Z (2016) Implication of nitric oxide (NO) in excess element-induced morphogenic responses of the root system. Plant Physiology and Biochemistry 101, 149-61.

Kondo Y, Nurani AM, Saito C, Ichihashi Y, Saito M, Yamazaki K, Mitsuda N, Ohme-Takagi M and Fukuda H (2016) Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells. PLANT CELL 28, 1250-62.

Kong L-a, Wu D-q, Huang W-k, Peng H, He W-t and Peng D-l (2016) Assaying the potential of twenty-one legume plants in Medicago truncatula and M. sativa for candidate model plants for investigation the interactions with Heterodera glycines. Journal of Integrative Agriculture 15, 702-4.

Kono TJY, Fu F, Mohammadi M, Hoffman PJ, Liu C, Stupar RM, Smith KP, Tiffin P, Fay JC and Morrell PL (2016) The Role of Deleterious Substitutions in Crop Genomes. Mol. Biol. Evol. 33, 2307-17.

Koroney AS, Plasson C, Pawlak B, Sidikou R, Driouich A, Menu-Bouaouiche L, Vicre-Gibouin M, #x and te (2016) Root exudate of Solanum tuberosum is enriched in galactose-containing molecules and impacts the growth of Pectobacterium atrosepticum. Ann. Bot. 118, 797-808.

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Kryvoruchko IS, Sinharoy S, Torres-Jerez I, Sosso D, Pislariu CI, Guan D, Murray J, Benedito VA, Frommer WB and Udvardi MK (2016) MtSWEET11, a Nodule-Specific Sucrose Transporter of Medicago truncatula. Plant Physiology 171, 554-65.

Kuan T, Zhai Y and Ma W (2016) Small RNAs regulate plant responses to filamentous pathogens. Seminars in Cell & Developmental Biology 56, 190-200.

Kuhn BM, Errafi S, Bucher R, Dobrev P, Geisler M, Bigler L, Zazimalova E and Ringli C (2016) 7-Rhamnosylated Flavonols Modulate Homeostasis of the Plant Hormone Auxin and Affect Plant Development. J. Biol. Chem. 291, 5385-95.

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Kumar A, Gupta C, Nair DT and Salunke DM (2016) MP-4 Contributes to Snake Venom Neutralization by Mucuna pruriens Seeds through an Indirect Antibody-mediated Mechanism. J. Biol. Chem. 291, 11373-84.

Kumar K, Srivastava V, Purayannur S, Kaladhar VC, Cheruvu PJ and Verma PK (2016) WRKY domain-encoding genes of a crop legume chickpea (Cicer arietinum): comparative analysis with Medicago truncatula WRKY family and characterization of group-III gene(s). DNA Res 23, 225-39.

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Anonymous (2015) Interview with Richard A. Dixon. Trends in Plant Science 20, 1-2.

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Chen Z, Sun L, Liu P, Liu G, Tian J and Liao H (2015) Malate Synthesis and Secretion Mediated by a Manganese-Enhanced Malate Dehydrogenase Confers Superior Manganese Tolerance in Stylosanthes guianensis. Plant Physiology 167, 176-88.

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Du Q, Avci U, Li S, Gallego-Giraldo L, Pattathil S, Qi L, Hahn MG and Wang H (2015) Activation of miR165b represses AtHB15 expression and induces pith secondary wall development in Arabidopsis. The Plant Journal 83, 388-400.

Duan J, Tian H, Drijber RA and Gao Y (2015) Systemic and local regulation of phosphate and nitrogen transporter genes by arbuscular mycorrhizal fungi in roots of winter wheat (Triticum aestivum L.). Plant Physiology and Biochemistry 96, 199-208.

Dugé de Bernonville T, Clastre M, Besseau S, Oudin A, Burlat V, Glévarec G, Lanoue A, Papon N, Giglioli-Guivarc’h N, St-Pierre B and Courdavault V (2015) Phytochemical genomics of the Madagascar periwinkle: Unravelling the last twists of the alkaloid engine. Phytochemistry 113, 9-23.

Dupont P-Y, Eaton CJ, Wargent JJ, Fechtner S, Solomon P, Schmid J, Day RC, Scott B and Cox MP (2015) Fungal endophyte infection of ryegrass reprograms host metabolism and alters development. New Phytologist 208, 1227-40.

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Dürr C, Dickie JB, Yang XY and Pritchard HW (2015) Ranges of critical temperature and water potential values for the germination of species worldwide: Contribution to a seed trait database. Agricultural and Forest Meteorology 200, 222-32.

Dwivedi SL, Sahrawat KL, Upadhyaya HD, Mengoni A, Galardini M, Bazzicalupo M, Biondi EG, Hungria M, Kaschuk G, Blair MW and Ortiz R (2015) Chapter One - Advances in Host Plant and Rhizobium Genomics to Enhance Symbiotic Nitrogen Fixation in Grain Legumes. In ‘Advances in Agronomy’. (Ed.^(Eds Donald L S) pp. 1-116. (Academic Press).

Ekanayaka EAP, Celiz MD and Jones AD (2015) Relative Mass Defect Filtering of Mass Spectra: A Path to Discovery of Plant Specialized Metabolites. Plant Physiology 167, 1221-32.

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Escobar C, Barcala M, Cabrera J and Fenoll C (2015) Chapter One - Overview of Root-Knot Nematodes and Giant Cells. In ‘Advances in Botanical Research’. (Ed.^(Eds Carolina E and Carmen F) pp. 1-32. (Academic Press).

Espinosa K, Boelter J, Lolle S, Hopkins M, Goggi S, Palmer RG and Sandhu D (2015) Evaluation of spontaneous generation of allelic variation in soybean in response to sexual hybridization and stress. Canadian journal of plant science. 95, 405-15.

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Fan K, Fan D, Ding Z, Su Y and Wang X (2015) Cs-miR156 is involved in the nitrogen form regulation of catechins accumulation in tea plant (Camellia sinensis L.). Plant Physiology and Biochemistry 97, 350-60.

Fan K, Shen H, Bibi N, Li F, Yuan S, Wang M and Wang X (2015) Molecular evolution and species-specific expansion of the NAP members in plants. Journal of Integrative Plant Biology 57, 673-87.

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Fang X, Chen J, Dai L, Ma H, Zhang H, Yang J, Wang F and Yan C (2015) Proteomic dissection of plant responses to various pathogens. Proteomics 15, 1525-43.

Fawke S, Doumane M and Schornack S (2015) Oomycete Interactions with Plants: Infection Strategies and Resistance Principles. Microbiol. Mol. Biol. Rev. 79, 263-80.

Feder A, Burger J, Gao S, Lewinsohn E, Katzir N, Schaffer AA, Meir A, Davidovich-Rikanati R, Portnoy V, Gal-On A, Fei Z, Kashi Y and Tadmor Y (2015) A Kelch Domain-Containing F-Box Coding Gene Negatively Regulates Flavonoid Accumulation in Muskmelon. Plant Physiology 169, 1714-26.

Fehér A (2015) Somatic embryogenesis — Stress-induced remodeling of plant cell fate. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1849, 385-402.

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Gong B, Li X, Bloszies S, Wen D, Sun S, Wei M, Li Y, Yang F, Shi Q and Wang X (2014) Sodic alkaline stress mitigation by interaction of nitric oxide and polyamines involves antioxidants and physiological strategies in Solanum lycopersicum. Free Radical Biology and Medicine 71, 36-48.

Gordon SP, Priest H, Des Marais DL, Schackwitz W, Figueroa M, Martin J, Bragg JN, Tyler L, Lee C-R, Bryant D, Wang W, Messing J, Manzaneda AJ, Barry K, Garvin DF, Budak H, Tuna M, Mitchell-Olds T, Pfender WF, Juenger TE, Mockler TC and Vogel JP (2014) Genome diversity in Brachypodium distachyon: deep sequencing of highly diverse inbred lines. The Plant Journal 79, 361-74.

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Guan R, Qu Y, Guo Y, Yu L, Liu Y, Jiang J, Chen J, Ren Y, Liu G, Tian L, Jin L, Liu Z, Hong H, Chang R, Gilliham M and Qiu L (2014) Salinity tolerance in soybean is modulated by natural variation in GmSALT3. The Plant Journal 80, 937-50.

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Guo D, Dexheimer TS, Pommier Y and Nash HA (2014) Neuroprotection and repair of 3’-blocking DNA ends by glaikit (gkt) encoding Drosophila tyrosyl-DNA phosphodiesterase 1 (TDP1). PNAS 111, 15816-20.

Guo H, Sun Y, Li Y, Liu X, Wang P, Zhu-Salzman K and Ge F (2014) Elevated CO2 alters the feeding behaviour of the pea aphid by modifying the physical and chemical resistance of Medicago truncatula. Plant, Cell & Environment 37, 2158-68.

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Guo H, Sun Y, Li Y, Liu X, Zhang W and Ge F (2014) Elevated CO2 decreases the response of the ethylene signaling pathway in Medicago truncatula and increases the abundance of the pea aphid. New Phytologist 201, 279-91.

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Jiang L, Zhang L, Shi Y, Lu Z and Yu Z (2014) Proteomic analysis of peach fruit during ripening upon post-harvest heat combined with 1-MCP treatment. Journal of Proteomics 98, 31-43.

Jiang T, Zhai H, Wang F-b, Zhou H-n, Si Z-z, He S-z and Liu Q-c (2014) Cloning and Characterization of a Salt Tolerance-Associated Gene Encoding Trehalose-6-Phosphate Synthase in Sweetpotato. Journal of Integrative Agriculture 13, 1651-61.

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Liu Z, Ma L, He X and Tian C (2014) Water strategy of mycorrhizal rice at low temperature through the regulation of PIP aquaporins with the involvement of trehalose. Applied Soil Ecology 84, 185-91.

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Ping J, Liu Y, Sun L, Zhao M, Li Y, She M, Sui Y, Lin F, Liu X, Tang Z, Nguyen H, Tian Z, Qiu L, Nelson RL, Clemente TE, Specht JE and Ma J (2014) Dt2 Is a Gain-of-Function MADS-Domain Factor Gene That Specifies Semideterminacy in Soybean. PLANT CELL 26, 2831-42.

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Plett JM, Khachane A, Ouassou M, Sundberg B, Kohler A and Martin F (2014) Ethylene and jasmonic acid act as negative modulators during mutualistic symbiosis between Laccaria bicolor and Populus roots. New Phytologist 202, 270-86.

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Potashev K, Sharonova N and Breus I (2014) The use of cluster analysis for plant grouping by their tolerance to soil contamination with hydrocarbons at the germination stage. Science of The Total Environment 485–486, 71-82.

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Prosser GA, Larrouy-Maumus G and de Carvalho LPS (2014) Metabolomic strategies for the identification of new enzyme functions and metabolic pathways. EMBO reports 15, 657-69.

Qiang-long Z, Shi L, Peng G and Fei-shi L (2014) High-throughput Sequencing Technology and Its Application. Journal of Northeast Agricultural University (English edition) 21, 84-96.

Quan J, Zhang C, Zhang S, Meng S, Zhao Z and Xu X (2014) Molecular cloning and expression analysis of the MTN gene during adventitious root development in IBA-induced tetraploid black locust. Gene 553, 140-50.

Rabot A, Portemer V, Peron T, Mortreau E, Leduc N, Hamama L, Coutos-Thevenot P, Atanassova R, Sakr S and Le Gourrierec J (2014) Interplay of Sugar, Light and Gibberellins in Expression of Rosa hybrida Vacuolar Invertase 1 Regulation. Plant Cell Physiol. 55, 1734-48.

Ragauskas AJ, Beckham GT, Biddy MJ, Chandra R, Chen F, Davis MF, Davison BH, Dixon RA, Gilna P, Keller M, Langan P, Naskar AK, Saddler JN, Tschaplinski TJ, Tuskan GA and Wyman CE (2014) Lignin Valorization: Improving Lignin Processing in the Biorefinery. Science 344, 1246843-.

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Rahoui S, Ben C, Chaoui A, Martinez Y, Yamchi A, Rickauer M, Gentzbittel L and El Ferjani E (2014) Oxidative injury and antioxidant genes regulation in cadmium-exposed radicles of six contrasted Medicago truncatula genotypes. Environmental science and pollution research. 21, 8070-83.

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Rashid B, Husnain T and Riazuddin S (2014) Chapter 1 - Genomic Approaches and Abiotic Stress Tolerance in Plants. In ‘Emerging Technologies and Management of Crop Stress Tolerance’. (Ed.^(Eds  pp. 1-37. (Academic Press: San Diego).

Ratnaparkhe MB, Lee T-H, Tan X, Wang X, Li J, Kim C, Rainville LK, Lemke C, Compton RO, Robertson J, Gallo M, Bertioli DJ and Paterson AH (2014) Comparative and Evolutionary Analysis of Major Peanut Allergen Gene Families. Genome Biol Evol 6, 2468-88.

Rebehmed J, Revy P, Faure G, de Villartay J-P and Callebaut I (2014) Expanding the SRI domain family: A common scaffold for binding the phosphorylated C-terminal domain of RNA polymerase II. FEBS Letters 588, 4431-7.

Remus-Emsermann MNP, Lücker S, Müller DB, Potthoff E, Daims H and Vorholt JA (2014) Spatial distribution analyses of natural phyllosphere-colonizing bacteria on Arabidopsis thaliana revealed by fluorescence in situ hybridization. Environmental Microbiology 16, 2329-40.

Rennenberg H and Herschbach C (2014) A detailed view on sulphur metabolism at the cellular and whole-plant level illustrates challenges in metabolite flux analyses. J. Exp. Bot. 65, 5711-24.

Rhee SY and Mutwil M (2014) Towards revealing the functions of all genes in plants. Trends in Plant Science 19, 212-21.

Rispail N and Rubiales D (2014) Identification of Sources of Quantitative Resistance to Fusarium oxysporum f. sp. medicaginis in Medicago truncatula. Plant disease. 98, 667-73.

Robbins NE, II, Trontin C, Duan L and Dinneny JR (2014) Beyond the Barrier: Communication in the Root through the Endodermis. Plant Physiology 166, 551-9.

Robinson AL, Boss PK, Solomon PS, Trengove RD, Heymann H and Ebeler SE (2014) Origins of Grape and Wine Aroma. Part 1. Chemical Components and Viticultural Impacts. Am. J. Enol. Vitic. 65, 1-24.

Rodríguez-Rodríguez MF, Salas JJ, Garcés R and Martínez-Force E (2014) Acyl-ACP thioesterases from Camelina sativa: Cloning, enzymatic characterization and implication in seed oil fatty acid composition. Phytochemistry 107, 7-15.

Rogers C and Oldroyd GED (2014) Synthetic biology approaches to engineering the nitrogen symbiosis in cereals. J. Exp. Bot. 65, 1939-46.

Roodgar Nashta M, Shahpiri A and Mohammad Beigi M (2014) Substitution of Thr55 by Gly and Lys48 by Asp in OsTrx20 using site-directed mutagenesis. International Journal of Biological Macromolecules 68, 185-8.

Roppolo D, Boeckmann B, Pfister A, Boutet E, Rubio MC, Denervaud-Tendon V, Vermeer JEM, Gheyselinck J, Xenarios I and Geldner N (2014) Functional and Evolutionary Analysis of the CASPARIAN STRIP MEMBRANE DOMAIN PROTEIN Family. Plant Physiology 165, 1709-22.

Roschzttardtz H, Paez-Valencia J, Dittakavi T, Jali S, Reyes FC, Baisa G, Anne P, Gissot L, Palauqui J-C, Masson PH, Bednarek SY and Otegui MS (2014) The VASCULATURE COMPLEXITY AND CONNECTIVITY Gene Encodes a Plant-Specific Protein Required for Embryo Provasculature Development. Plant Physiology 166, 889-902.

Roux B, Rodde N, Jardinaud MF, Timmers T, Sauviac L, Cottret L, Carrère S, Sallet E, Courcelle E, Moreau S, Debellé F, Capela D, CarvalhoNiebel F, Gouzy J, Bruand C and Gamas P (2014) An integrated analysis of plant and bacterial gene expression in symbiotic root nodules using lasercapture microdissection coupled to RNA sequencing. Plant journal. 77, 817-37.

Roux B, Rodde N, Jardinaud M-F, Timmers T, Sauviac L, Cottret L, Carrère S, Sallet E, Courcelle E, Moreau S, Debellé F, Capela D, de Carvalho-Niebel F, Gouzy J, Bruand C and Gamas P (2014) An integrated analysis of plant and bacterial gene expression in symbiotic root nodules using laser-capture microdissection coupled to RNA sequencing. The Plant Journal 77, 817-37.

Ruszkowski M, Sliwiak J, Ciesielska A, Barciszewski J, Sikorski M and Jaskolski M (2014) Specific binding of gibberellic acid by Cytokinin-Specific Binding Proteins: a new aspect of plant hormone-binding proteins with the PR-10 fold. Acta Crystallographica Section D 70, 2032-41.

Ryan GD, Shukla K, Rasmussen S, Shelp BJ and Newman JA (2014) Phloem phytochemistry and aphid responses to elevated CO2, nitrogen fertilization and endophyte infection. Agricultural and Forest Entomology 16, 273-83.

Sabir J, Schwarz E, Ellison N, Zhang J, Baeshen NA, Mutwakil M, Jansen R and Ruhlman T (2014) Evolutionary and biotechnology implications of plastid genome variation in the inverted-repeat-lacking clade of legumes. Plant Biotechnology Journal 12, 743-54.

Saha S, Dutta A, Bhattacharya A and DasGupta M (2014) Intracellular Catalytic Domain of Symbiosis Receptor Kinase Hyperactivates Spontaneous Nodulation in Absence of Rhizobia. Plant Physiology 166, 1699-708.

Saika H, Horita J, Taguchi-Shiobara F, Nonaka S, Nishizawa-Yokoi A, Iwakami S, Hori K, Matsumoto T, Tanaka T, Itoh T, Yano M, Kaku K, Shimizu T and Toki S (2014) A Novel Rice Cytochrome P450 Gene, CYP72A31, Confers Tolerance to Acetolactate Synthase-Inhibiting Herbicides in Rice and Arabidopsis. Plant Physiology 166, 1232-40.

Sakuraba Y, Kim D, Kim Y-S, Hörtensteiner S and Paek N-C (2014) Arabidopsis STAYGREEN-LIKE (SGRL) promotes abiotic stress-induced leaf yellowing during vegetative growth. FEBS Letters 588, 3830-7.

Sakuraba Y, Park S-Y, Kim Y-S, Wang S-H, Yoo S-C, Hörtensteiner S and Paek N-C (2014) Arabidopsis STAY-GREEN2 Is a Negative Regulator of Chlorophyll Degradation during Leaf Senescence. Molecular Plant 7, 1288-302.

Saladie M, Wright LP, Garcia-Mas J, Rodriguez-Concepcion M and Phillips MA (2014) The 2-C-methylerythritol 4-phosphate pathway in melon is regulated by specialized isoforms for the first and last steps. J. Exp. Bot. 65, 5077-92.

Sánchez AC, Gutiérrez RT, Santana RC, Urrutia AR, Fauvart M, Michiels J and Vanderleyden J (2014) Effects of co-inoculation of native Rhizobium and Pseudomonas strains on growth parameters and yield of two contrasting Phaseolus vulgaris L. genotypes under Cuban soil conditions. European Journal of Soil Biology 62, 105-12.

Santos C, Silva S and Pinto-Carnide O (2014) Chapter Six - Aluminum Phytotoxicity: Physiological Approaches and Tolerance. In ‘Advances in Molecular Toxicology’. (Ed.^(Eds James CF and Jacqueline MH) pp. 203-36. (Elsevier).

Sanz L, Fernandez-Marcos M, Modrego A, Lewis DR, Muday GK, Pollmann S, Duenas M, Santos-Buelga C and Lorenzo O (2014) Nitric Oxide Plays a Role in Stem Cell Niche Homeostasis through Its Interaction with Auxin. Plant Physiology 166, 1972-84.

Sarfraz Hussain S and Shi B (2014) Chapter 9 - Role of miRNAs in Abiotic and Biotic Stresses in Plants. In ‘Emerging Technologies and Management of Crop Stress Tolerance’. (Ed.^(Eds  pp. 181-207. (Academic Press: San Diego).

Sassi-Aydi S, Aydi S and Abdelly C (2014) Inorganic Nitrogen Nutrition Enhances Osmotic Stress Tolerance in Phaseolus vulgaris: Lessons from a Drought-sensitive Cultivar. HortScience 49, 550-5.

Saxena MS, Bajaj D, Das S, Kujur A, Kumar V, Singh M, Bansal KC, Tyagi AK and Parida SK (2014) An Integrated Genomic Approach for Rapid Delineation of Candidate Genes Regulating Agro-Morphological Traits in Chickpea. DNA Res 21, 695-710.

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Schenk ST, Hernandez-Reyes C, Samans B, Stein E, Neumann C, Schikora M, Reichelt M, Mithofer A, Becker A, Kogel K-H and Schikora A (2014) N-Acyl-Homoserine Lactone Primes Plants for Cell Wall Reinforcement and Induces Resistance to Bacterial Pathogens via the Salicylic Acid/Oxylipin Pathway. PLANT CELL 26, 2708-23.

Schmitz AM and Harrison MJ (2014) Signaling events during initiation of arbuscular mycorrhizal symbiosis. Journal of Integrative Plant Biology 56, 250-61.

Scorza LCT, Rossi ML and Dornelas MC (2014) Vacuolar remodelling mediates touch-induced androgynophore movement in Passiflora (Subg. Decaloba, Sect. Xerogona) flowers. Flora - Morphology, Distribution, Functional Ecology of Plants 209, 613-9.

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Sha Valli Khan PS, Nagamallaiah GV, Dhanunjay Rao M, Sergeant K and Hausman JF (2014) Chapter 2 - Abiotic Stress Tolerance in Plants: Insights from Proteomics. In ‘Emerging Technologies and Management of Crop Stress Tolerance’. (Ed.^(Eds  pp. 23-68. (Academic Press: San Diego).

Sha Z, Gong G, Wang S, Lu Y, Wang L, Wang Q and Chen S (2014) Identification and characterization of Cynoglossus semilaevis microRNA response to Vibrio anguillarum infection through high-throughput sequencing. Developmental & Comparative Immunology 44, 59-69.

Shabala S, Shabala L, Barcelo J and Poschenrieder C (2014) Membrane transporters mediating root signalling and adaptive responses to oxygen deprivation and soil flooding. Plant, Cell & Environment 37, 2216-33.

Shafique A, Rehman S, Khan A and Kazi AG (2014) Chapter 1 - Improvement of Legume Crop Production Under Environmental Stresses Through Biotechnological Intervention. In ‘Emerging Technologies and Management of Crop Stress Tolerance’. (Ed.^(Eds  pp. 1-22. (Academic Press: San Diego).

Shao Z-Q, Zhang Y-M, Hang Y-Y, Xue J-Y, Zhou G-C, Wu P, Wu X-Y, Wu X-Z, Wang Q, Wang B and Chen J-Q (2014) Long-Term Evolution of Nucleotide-Binding Site-Leucine-Rich Repeat Genes: Understanding Gained from and beyond the Legume Family. Plant Physiology 166, 217-34.

Shearer LA, Anderson LK, de Jong H, Smit S, Goicoechea JL, Roe BA, Hua A, Giovannoni JJ and Stack SM (2014) Fluorescence In Situ Hybridization and Optical Mapping to Correct Scaffold Arrangement in the Tomato Genome. g3 4, 1395-405.

Shen H, He Z, Yan H, Xing Z, Chen Y, Xu W, Xu W and Ma M (2014) The fronds tonoplast quantitative proteomic analysis in arsenic hyperaccumulator Pteris vittata L. Journal of Proteomics 105, 46-57.

Sherman-Broyles S, Bombarely A, Grimwood J, Schmutz J and Doyle J (2014) Complete Plastome Sequences from Glycine syndetika and Six Additional Perennial Wild Relatives of Soybean. g3 4, 2023-33.

Sherman-Broyles S, Bombarely A, Powell AF, Doyle JL, Egan AN, Coate JE and Doyle JJ (2014) The wild side of a major crop: Soybean’s perennial cousins from Down Under. Am. J. Botany 101, 1651-65.

Shi BEN, Ni LAN, Liu Y, Zhang A, Tan M and Jiang M (2014) OsDMI3-mediated activation of OsMPK1 regulates the activities of antioxidant enzymes in abscisic acid signalling in rice. Plant, Cell & Environment 37, 341-52.

Shi B-k, Huang J-l, Hu C-x and Hou M-l (2014) Interactive Effects of Elevated CO2 and Temperature on Rice Planthopper, Nilaparvata lugens. Journal of Integrative Agriculture 13, 1520-9.

Shi H and Chan Z (2014) Improvement of plant abiotic stress tolerance through modulation of the polyamine pathway. Journal of Integrative Plant Biology 56, 114-21.

Shi H, Zou X, Xu C, Li J, Liu B and Chen L (2014) The inheritance and expression patterns of two classes of retinoblastoma-related genes in the stem of Brassica juncea from both parental genomes. Scientia Horticulturae 176, 238-47.

Shi T, Huang H, Sanderson MJ and Tax FE (2014) Evolutionary dynamics of leucine-rich repeat receptor-like kinases and related genes in plants: A phylogenomic approach. Journal of Integrative Plant Biology 56, 648-62.

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